Software and Programming
Software Modules A place to discuss the Lmod software module system. Python A place to discuss the Python programming language. Julia A place to discuss the Julia programming language. GPU A place to discuss GPU programming. MPI A place to discuss MPI programming. MATLAB A place to discuss the MATLAB programming language. R A place to discuss the R programming language. Singularity A place to discuss Singularity software containers.
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About the Software and Programming category
The Software and Programming category is a place to discuss different programming languages (Python, R, MATLAB, etc.) and using them on CARC systems, the different software available to you, and navigating the Lmod softw… |
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1 | 570 | August 13, 2020 |
| Python Environment Management |
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1 | 74 | February 21, 2024 |
| Fail to load libgfortran.so.3 |
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7 | 2447 | February 14, 2024 |
| Angsd mamba package not working |
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3 | 148 | November 28, 2023 |
| Cannot import user-made python package within certain folders? |
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3 | 265 | November 9, 2023 |
| Has anyone installed Alphafold2? |
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2 | 825 | November 1, 2023 |
| SSH FS and VS Code |
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0 | 185 | September 7, 2023 |
| Cuda driver version does not match cuda toolkit (nvcc) |
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0 | 507 | September 1, 2023 |
| Use of mictools |
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0 | 312 | August 31, 2023 |
| Display on CARC Servers |
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1 | 158 | August 30, 2023 |
| Devtools in R Installation |
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3 | 372 | August 25, 2023 |
| libXext.so.6 Java package error on RStudio |
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4 | 576 | July 26, 2023 |
| RStudio Abnormally Terminated error |
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1 | 408 | July 13, 2023 |
| Possible to use Quarto? |
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2 | 391 | July 13, 2023 |
| Trouble installing modules via pip |
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2 | 358 | July 7, 2023 |
| How to check GPU usage and memory |
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2 | 625 | May 16, 2023 |
| Installing python modules |
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1 | 309 | April 28, 2023 |
| Errors compiling c++ torch frontend with Boost library |
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0 | 544 | April 24, 2023 |
| Unable to connect to discovery from VS code |
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19 | 4219 | April 15, 2023 |
| Error during the installation of Bioinfo tool EthSEQ |
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1 | 573 | January 30, 2023 |
| Error running python script after conda and gcc update |
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1 | 1017 | January 27, 2023 |
| Error in sourcing local perl modules |
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10 | 534 | January 12, 2023 |
| Error installing R package "SingleCellExperiment" |
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6 | 1817 | November 27, 2022 |
| Installing devtools in R |
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0 | 418 | October 2, 2022 |
| Unable to use Matlab on the cluster |
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1 | 441 | September 27, 2022 |
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R package installation guide
A guide for installing R packages using the software modules available on CARC HPC clusters. The following instructions are based on the R 4.3.2 module: module purge module load gcc/11.3.0 module load openblas/0.3.20 m… |
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1 | 3398 | September 22, 2022 |
| Unable to install packages |
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4 | 2741 | August 5, 2022 |
| STAR Error: version incompatible with genome |
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1 | 716 | June 22, 2022 |
| Installing software compiled with newer version of GLIBC |
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0 | 922 | May 27, 2022 |
| Running singularity on a proj directory |
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10 | 352 | May 17, 2022 |