I am trying to run a job script using a spaceranger package. When I run the script, the script shows running and completed on the CARC website. The jobid.out file only contains the job id information and has no errors (implying that the script ran without errors). However, when I look for the expected output directories from the script, they don’t exist. Normally, such a script would take a couple hours to run at least. I’m not sure whether this is an issue on my end or something else.
Any ideas on how to fix this?