Hello!
I am using .qmd to create an .html report for my colleagues using an Interactive RStudio server. Code chunks work as expected when written in R and in bash and show both input code and output messages after rendering to .html, for example:
```{r, echo = T}
print("hello world")
```
```{bash, echo = T}
echo "hello world"
ls --help | head
```
However, I am trying to now activate my conda environment but it does not seem to be working. When trying to troubleshoot in a login node, I tried using all modules (languages?) available with module list, but I cannot reproduce similar results to above. Specifying bash gives me an error (command unknown), and every other language does not give me any outputs/
```{gcc, echo = T}
conda activate biotools
fasterq-dump --help
```