Has anyone installed Alphafold2?

Software and Programming
1

Hello! I was wondering if anyone has installed Google Deepmind Alphafold 2 on CARC? I think it would run well. I know there are some structural biologist and we have some sequences to run. It has some large storage requirements and takes awhile to train. I think it would be a cool resource.

Here is the github page, GitHub - deepmind/alphafold: Open source code for AlphaFold.

matt

2

Hey! Did you end up installing this?

3

No they just ignored me. Ensembl has annotations for AlphaFold. Most of my needs were from annotations from mapped NGS reads. Ensembl biomaRt will give accession numbers from which you can get get structural information. If you have novel sequence this wont help though. Good luck!!