Software and Programming
Python A place to discuss the Python programming language. Software Modules A place to discuss the Lmod software module system. Julia A place to discuss the Julia programming language. GPU A place to discuss GPU programming. MATLAB A place to discuss the MATLAB programming language. R A place to discuss the R programming language. MPI A place to discuss MPI programming. Singularity A place to discuss Singularity software containers.
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About the Software and Programming category
The Software and Programming category is a place to discuss different programming languages (Python, R, MATLAB, etc.) and using them on CARC systems, the different software available to you, and navigating the Lmod softw… |
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1 | 298 | August 13, 2020 |
| Error installing R package "SingleCellExperiment" |
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6 | 187 | November 27, 2022 |
| Installing devtools in R |
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0 | 104 | October 2, 2022 |
| Unable to use Matlab on the cluster |
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1 | 64 | September 27, 2022 |
| Unable to connect to discovery from VS code |
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18 | 2045 | September 25, 2022 |
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R package installation guide
A guide for installing certain R packages using the modules available on CARC systems. The following instructions are based on the R 4.2.1 module: module purge module load gcc/11.3.0 module load openblas/0.3.20 module … |
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1 | 235 | September 22, 2022 |
| Has anyone installed Alphafold2? |
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0 | 230 | May 23, 2022 |
| Unable to install packages |
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4 | 549 | August 5, 2022 |
| STAR Error: version incompatible with genome |
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1 | 183 | June 22, 2022 |
| Installing software compiled with newer version of GLIBC |
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0 | 257 | May 27, 2022 |
| Running singularity on a proj directory |
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10 | 133 | May 17, 2022 |
| Unable use pytorch with cuda |
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1 | 160 | April 15, 2022 |
| C/C++ module for stddef.h? |
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18 | 3551 | April 1, 2022 |
| Failed to build package Zoltan |
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0 | 141 | March 23, 2022 |
| Fail to load libgfortran.so.3 |
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2 | 631 | March 3, 2022 |
| Runtime Warning: Mean of Empty Slice Error |
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2 | 682 | January 6, 2022 |
| Use Cmake in an MPI C++ program |
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4 | 1575 | December 13, 2021 |
| Failed to install any r packages |
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6 | 360 | October 4, 2021 |
| Creating a Socket Cluster with the slurmR R package |
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5 | 1393 | August 16, 2021 |
| Launcher now available |
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0 | 285 | July 26, 2021 |
| Plotting with MATLAB |
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1 | 243 | July 9, 2021 |
| Deeptools Installation Error |
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1 | 508 | June 22, 2021 |
| DiffBind dba.count() |
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0 | 167 | June 21, 2021 |
| Installing packages "rgdal", "terra" and "sf" |
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0 | 271 | June 20, 2021 |
| @INC Error with Perl |
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3 | 262 | May 21, 2021 |
| Installing virtual environment (python 2.7.6) |
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1 | 1499 | October 6, 2020 |
| Error loading openpmi.so.0 |
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2 | 433 | March 20, 2021 |
| Installing C++ compiler |
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18 | 304 | May 18, 2021 |
| Problem accessing Ingenuity Pathway analysis software |
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0 | 217 | May 17, 2021 |
| Please add imagemagick to cluster |
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4 | 361 | May 13, 2021 |