Software and Programming
Software Modules A place to discuss the Lmod software module system. Python A place to discuss the Python programming language. Julia A place to discuss the Julia programming language. GPU A place to discuss GPU programming. MPI A place to discuss MPI programming. MATLAB A place to discuss the MATLAB programming language. R A place to discuss the R programming language. Singularity A place to discuss Singularity software containers.
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About the Software and Programming category
The Software and Programming category is a place to discuss different programming languages (Python, R, MATLAB, etc.) and using them on CARC systems, the different software available to you, and navigating the Lmod softw… |
1 | 562 | August 13, 2020 | |
Python Environment Management | 1 | 61 | February 21, 2024 | |
Fail to load libgfortran.so.3 | 7 | 2368 | February 14, 2024 | |
Angsd mamba package not working | 3 | 132 | November 28, 2023 | |
Cannot import user-made python package within certain folders? | 3 | 243 | November 9, 2023 | |
Has anyone installed Alphafold2? | 2 | 807 | November 1, 2023 | |
SSH FS and VS Code | 0 | 173 | September 7, 2023 | |
Cuda driver version does not match cuda toolkit (nvcc) | 0 | 492 | September 1, 2023 | |
Use of mictools | 0 | 291 | August 31, 2023 | |
Display on CARC Servers | 1 | 151 | August 30, 2023 | |
Devtools in R Installation | 3 | 327 | August 25, 2023 | |
libXext.so.6 Java package error on RStudio | 4 | 532 | July 26, 2023 | |
RStudio Abnormally Terminated error | 1 | 392 | July 13, 2023 | |
Possible to use Quarto? | 2 | 367 | July 13, 2023 | |
Trouble installing modules via pip | 2 | 343 | July 7, 2023 | |
How to check GPU usage and memory | 2 | 595 | May 16, 2023 | |
Installing python modules | 1 | 299 | April 28, 2023 | |
Errors compiling c++ torch frontend with Boost library | 0 | 524 | April 24, 2023 | |
Unable to connect to discovery from VS code | 19 | 4133 | April 15, 2023 | |
Error during the installation of Bioinfo tool EthSEQ | 1 | 557 | January 30, 2023 | |
Error running python script after conda and gcc update | 1 | 970 | January 27, 2023 | |
Error in sourcing local perl modules | 10 | 516 | January 12, 2023 | |
Error installing R package "SingleCellExperiment" | 6 | 1757 | November 27, 2022 | |
Installing devtools in R | 0 | 413 | October 2, 2022 | |
Unable to use Matlab on the cluster | 1 | 431 | September 27, 2022 | |
R package installation guide
A guide for installing R packages using the software modules available on CARC HPC clusters. The following instructions are based on the R 4.3.2 module: module purge module load gcc/11.3.0 module load openblas/0.3.20 m… |
1 | 3272 | September 22, 2022 | |
Unable to install packages | 4 | 2687 | August 5, 2022 | |
STAR Error: version incompatible with genome | 1 | 679 | June 22, 2022 | |
Installing software compiled with newer version of GLIBC | 0 | 906 | May 27, 2022 | |
Running singularity on a proj directory | 10 | 346 | May 17, 2022 |