Software and Programming
Python A place to discuss the Python programming language. Software Modules A place to discuss the Lmod software module system. Julia A place to discuss the Julia programming language. GPU A place to discuss GPU programming. MATLAB A place to discuss the MATLAB programming language. R A place to discuss the R programming language. MPI A place to discuss MPI programming. Singularity A place to discuss Singularity software containers.
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About the Software and Programming category
The Software and Programming category is a place to discuss different programming languages (Python, R, MATLAB, etc.) and using them on CARC systems, the different software available to you, and navigating the Lmod softw… |
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1 | 348 | August 13, 2020 |
| Error during the installation of Bioinfo tool EthSEQ |
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1 | 126 | January 30, 2023 |
| Error running python script after conda and gcc update |
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1 | 100 | January 27, 2023 |
| Error in sourcing local perl modules |
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10 | 123 | January 12, 2023 |
| Error installing R package "SingleCellExperiment" |
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6 | 557 | November 27, 2022 |
| Installing devtools in R |
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0 | 188 | October 2, 2022 |
| Unable to use Matlab on the cluster |
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1 | 125 | September 27, 2022 |
| Unable to connect to discovery from VS code |
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18 | 2506 | September 25, 2022 |
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R package installation guide
A guide for installing R packages using the modules available on CARC HPC clusters. The following instructions are based on the R 4.2.2 module: module purge module load gcc/11.3.0 module load openblas/0.3.20 module loa… |
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1 | 733 | September 22, 2022 |
| Has anyone installed Alphafold2? |
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0 | 351 | May 23, 2022 |
| Unable to install packages |
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4 | 1119 | August 5, 2022 |
| STAR Error: version incompatible with genome |
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1 | 293 | June 22, 2022 |
| Installing software compiled with newer version of GLIBC |
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0 | 433 | May 27, 2022 |
| Running singularity on a proj directory |
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10 | 200 | May 17, 2022 |
| Unable use pytorch with cuda |
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1 | 240 | April 15, 2022 |
| C/C++ module for stddef.h? |
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18 | 4411 | April 1, 2022 |
| Failed to build package Zoltan |
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0 | 195 | March 23, 2022 |
| Fail to load libgfortran.so.3 |
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2 | 933 | March 3, 2022 |
| Runtime Warning: Mean of Empty Slice Error |
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2 | 969 | January 6, 2022 |
| Use Cmake in an MPI C++ program |
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4 | 2276 | December 13, 2021 |
| Failed to install any r packages |
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6 | 436 | October 4, 2021 |
| Creating a Socket Cluster with the slurmR R package |
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5 | 1715 | August 16, 2021 |
| Launcher now available |
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0 | 339 | July 26, 2021 |
| Plotting with MATLAB |
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1 | 317 | July 9, 2021 |
| Deeptools Installation Error |
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1 | 685 | June 22, 2021 |
| DiffBind dba.count() |
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0 | 228 | June 21, 2021 |
| Installing packages "rgdal", "terra" and "sf" |
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0 | 339 | June 20, 2021 |
| @INC Error with Perl |
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3 | 352 | May 21, 2021 |
| Installing virtual environment (python 2.7.6) |
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1 | 1696 | October 6, 2020 |
| Error loading openpmi.so.0 |
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2 | 533 | March 20, 2021 |