Hi! I’m enjoying using Quarto (elsewhere) as a modest improvement on R Markdown documents. One of the upsides of Quarto is that it is not R-dependent. The downside is that it is not an R package. Is it available in a module… somewhere?
Thanks!
Well, Quarto is totally available in an interactive session for me today! I don’t know how I missed it a couple of days ago.
What do I need to do to render a .qmd file via sbatch? I have module load pandoc for rendering rmds, but I’m not sure about qmds. I tried module load quarto but apparently that was wishful thinking, since I got:
Error in find_quarto() : Unable to find quarto command line tools.
Thank you!
Quarto is bundled with the RStudio Server app.
I added a quarto module:
module load quarto/1.3.433
For R code, you would also need an R module loaded and the rmarkdown package installed.
In batch mode you would render with a command like the following:
quarto render file.qmd --to html